Difficult words by Spache (1616)

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nofeature, fk, wr, gk, ratio, kon, gr, kand, rare, respective, weights, gon, kfor, gin, geneset, gare, doubly, separately, extremal, absolute, excluded, calculations, binomially, inverse, asymptotic, variances, logarithmic, transformation, converges, normal, exactly, evaluated, delta, lemma, constant, rbe, dierentiable, applied, logarithmically, transformed, logarithm, independence, ar, rg, kg, analogous, applying, approximates, rv, formulate, kare, submissions, faster, compliant, submitted, choices, databases, cial, broadly, stated, enforcement, tricky, primary, archives, basis, centers, european, institute, united, states, centres, connection, servers, conventional, collaboration, lab, protocol, stored, entity, infer, account, unknown, downloaded, link, tab, handling, classify, commentary, noted, compulsory, investigation, consistent, relation, etc, preparing, starting, distinguishing, inconsistencies, mandate, interchangeably, distinguished, accessions, categorized, hybrid, assays, checked, codes, parsed, downloading, page, validating, superseries, hypothesis, eligible, compatibility, ensured, datasets, consuming, larger, struction, status, tracking, maintaining, progress, improved, bandwidth, previously, published, additional, download, chip, retained, scaled, sized, homo, sapiens, andmus, musculus, gathered, partitioned, necessary, altogether, contained, occasional, partitioning, discovered, represents, standing, accocunt, involve, highly, mus, ve, sapiensexperiments, corresponding, demonstrates, similar, similarly, memwas, discovering, coexpressed, ymetrix, concerning, nd, probesets, greatest, similarity, query, expandable, querying, aggregation, signicance, assume, equal, ranked, numerically, closest, smallest, ranks, ranking, vector, attached, sorted, betamem, beta, express, lesser, closely, necessarily, meaningful, eects, incomparable, hybridised, memdisregards, pearson, correlation, frees, constraints, across, memfor, memare, organized, dened, translate, 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nearest, neighbour, indicating, classication, infer_experiment, pyscript, trained, suitability, validation, rawcount, htseqlibrary, specifying, relies, descriptive, sum, pmstr, mstr, str, accounting, tted, scraped, nucleic, acid, andnucleic, laplacian, smoothing, document, jbelonging, iis, jj, ij, jc, jv, woccurrences, class, iand, vis, vocabulary, di, dwith, arg, max, carried, rstly, discriminating, secondly, denitive, clusters, averaged, indicates, discernible, linearly, separable, recall, likewise, formed, plotted, previous, mismatched, versus, misclassied, implications, discrimination, bayesian, increased, text, suggested, belonging, conservatively, misclassifying, separating, labelling, complete, inability, necessitates, systematic, info, demonstrated, current, updated, newer, tracked, updates, owcharts, retrieval, looping, specically, remarked, released, corroborate, separation, broad, flowchart, explore, outlined, experimentand, valid, replicate, eliminated, critical, structural, composition, veried, sheet, meta, deals, formatting, preprocessing, series, gateway, parsing, body, columns, constitute, lanes, individually, merged, coherent, organisms, miss, invariably, transfer, mergers, tags, leformat, external, schema, creation, incompatibility, ahead, actually, illustrated, gigabytes, assertion, stage, unison, fastqcfor, lters, trims, ortophat, procedurally, somewhat, whenever, samtools, merging, surpassing, occurs, employs, holding, extracting, edgerpackage, resulting, manipulation, ncks, interference, disagreements, occasionally, pass, exclusion, discrepancies, maximally, memhas, discard, controlled, reports, synchronously, expects, space, positioned, explicitly, currently, halted, fastqcand, simultaneous, threads, starrequires, supplied, straightforward, sampled, randomly, segment, extensively, maximum, sorting, memory, starneeds, canonically, htseqbrings, estimates, despite, consumption, reliable, requiring, reruns, summaries, logged, debugging, test, issues, alligaator, mt, ut, ee, caiman, ongoing, reecting, success, fth, terminated, completion, messages, intel, xeon, cores, incompatible, incomplete, colorspace, successfully, completed, concerned, thale, cress, arabidopsis, thaliana, accurately, distribute, post, progression, timeline, supports, tophatall, measurement, spent, statistics, heatmap, attributed, starandhtseq, relatively, considerably, although, deviate, quantiles, median, empirical, intervals, min, upper, drawn, startaking, disproportionally, expense, periments, image, illustrates, irrelevant, largest, showing, explained, acknowledging, thalianahave, regardless, anomalies, twice, vast, analyse, subsequent, exper, failed, immediate, rattus, norvegicus, drosophila, melanogaster, iments, suering, failing, loss, negligible, worse, prevails, beforehand, precisely, immediately, inconsistent, timepoint, doing, normalizing, simulated, assuming, distributional, emerging, predened, threading, predispose, musculusandhomo, redirected, unprocessed, saccharomyces, cerevisiae, danio, rerio, andcaenorhabditis, elegans, extrapolated, concurrent, steady, comparatively, displayed, horizons, integration, newest, dates, interface, memqueries, expectedly, collagen, meminterface, coexpression, coloured, squares, opposite, conclusion, conduct, transforming, contribution, allowing, coordinated, shortest, inference, copiously, aecting, misguided, serve, becoming, infancy, corroborated, assesses, science, initiative